Molecular Alignment


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Molecular Dynamics Adiabatic Piston Model  v.1.0

Analyze molecular dynamics with this tool. Molecular Dynamics Adiabatic Piston model shows two gas samples within a horizontal cylinder that is divided by an insulated piston that moves without friction.

Molecular Dynamics Demonstration  v.1.0

Molecular Dynamics Demonstration is a molecular dynamics simulation.Molecular Dynamics Demonstration model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters.





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Molecular Dynamics Model  v.1.0

Study molecular dynamics with this tool. Molecular Dynamics model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws,

HMO (Huckel Molecular Orbital)  v.1.0

HMO (Huckel Molecular Orbital) is an interactive Huckel molecular orbital software created especially for Chem 3001. It is easy to learn, requires minimal input (in particular,

STRAP (Structure based Sequences Alignment Program)  v.1.0

Protein alignment made easy. STRAP (Structure based Sequences Alignment Program) aligns proteins by sequence and 3D-structure. It supports the simultaneous analysis of hundreds of proteins and integrates amino acid sequence, secondary structure,

PSSAT - Protein Secondary Structure Alignment Tool  v.1.0.1

PSSAT - Protein Secondary Structure Alignment Tool help you align two proteins, using secondary structure output predicted by PSIPRED. Developed in Haskell, using wxHaskell for GUI. This software will create a visual global or local alignment of two

MoSS (Molecular Substructure Miner)  v.2.4

MoSS (Molecular Substructure Miner) find molecular substructures with this tool, help you find frequent molecular substructures and discriminative fragments in a database of molecule descriptions. The algorithm is based on the Eclat algorithm for

ChromA (Chromatogram Alignment)  v.0.9

Chromatogram Alignment for Chromatography-Mass Spectrometry is a web based tool for the alignment and visualization of data from Chromatography-Mass Spectrometry.Consider the case of a Metabolomics experiment,

Molecular Formulas  v.1.1

Molecular Formulas is a software to help you study chemical formulas.

Molecular Weight  v.4.0

Average molecular weight calculator. Molecular Weight help you calculate the average molecular weight of a compound. The molecular formula of this compound can be entered by selecting the appropriate elements and their multipliers.

Molecular Motors  v.2.04

Molecular Motors can help you to discover what controls how fast tiny molecular motors in our body pull through a single strand of DNA. How hard can the motor pull in a tug of war with the optical tweezers? Discover what helps it pull harder.

Polarizable Fluids Molecular Dynamics  v.1.0rc2

PFMD performs a Molecular Dynamics simulation of some polarizable fluids at the liquid state by means of a dissociable potential.

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